SRR1297054

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

66/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

E. coli WGS on AB 5500xl SOLiD; 10.2M color-space reads achieving high coverage (118.3×) with moderate quality (Q30 50.8%). SOLiD platform enables orthogonal validation of indels and repeats; requires specialized bioinformatic handling.

Data type / assay

WGS

Organism

Escherichia coli

Instrument

AB 5500xl Genetic Analyzer

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 544340637 reported

total reads 10177905 reported

mean coverage 118.3 extrapolated

n content pct 0 measured

pct q20 bases 77.2 measured

pct q30 bases 50.8 measured

gc content pct 50.4 measured

mean read length 49.8 measured

mean base quality 25.6 measured

adapter content pct 0 measured

duplication rate pct 10.77 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 66/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 118.3 extrapolated ×1.2 100%

pct q30 bases 50.8 measured ×1 0%

duplication rate pct 10.77 measured ×0.5 91%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0