SRR1297067

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read WGS from E. coli on ABI_SOLID, grade F; evidence_strength is provisional (0.61) with extrapolated coverage. Measured Q30 (63.3%, 0/100) is critically low—only 63% of bases at Q30—making variant calls unreliable. Reuse requires deep measured revalidation.

Data type / assay

WGS

Organism

Escherichia coli

Instrument

AB 5500xl Genetic Analyzer

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 693390800 reported

total reads 13867816 reported

mean coverage 150.7 extrapolated

n content pct 0 measured

pct q20 bases 83.7 measured

pct q30 bases 63.3 measured

gc content pct 49.3 measured

mean read length 50 measured

mean base quality 27.1 measured

adapter content pct 0 measured

duplication rate pct 28.38 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 150.7 extrapolated ×1.2 100%

pct q30 bases 63.3 measured ×1 0%

duplication rate pct 28.38 measured ×0.5 36%

adapter content pct 0 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0