Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1297123

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This ABI SOLiD WGS dataset (AB 5500xl Genetic Analyzer) sequences Escherichia coli at 165× coverage using short-read format, generating 15.1 million reads. Base quality reaches 83.5% ≥Q20 and 62.5% ≥Q30 with zero N content, supporting genomic variant detection and bacterial resequencing. The high coverage depth enables accurate SNP and small indel calling despite SOLiD's intrinsic quality characteristics.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 757447300 reported
total reads 15148946 reported
mean coverage 164.7 extrapolated
n content pct 0 measured
pct q20 bases 83.5 measured
pct q30 bases 62.5 measured
gc content pct 49.9 measured
mean read length 50 measured
mean base quality 27 measured
adapter content pct 0 measured
duplication rate pct 30.09 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 164.7 extrapolated ×1.2 100%
pct q30 bases 62.5 measured ×1 0%
duplication rate pct 30.09 measured ×0.5 31%
adapter content pct 0 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0