Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR1297173

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

AB 5500xl SOLID sequencing of Escherichia coli whole-genome yielded 20M reads (1 Gb bases) with moderate quality (59.9% Q30) and high coverage (217.7×). This bacterial WGS dataset provides comprehensive genome representation for assembly and variant discovery, though SOLID color-space chemistry requires compatible bioinformatic pipelines.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
AB 5500xl Genetic Analyzer
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1001449800 reported
total reads 20028996 reported
mean coverage 217.7 extrapolated
n content pct 0 measured
pct q20 bases 81.8 measured
pct q30 bases 59.9 measured
gc content pct 50.2 measured
mean read length 50 measured
mean base quality 26.7 measured
adapter content pct 0 measured
duplication rate pct 26.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 217.7 extrapolated ×1.2 100%
pct q30 bases 59.9 measured ×1 0%
duplication rate pct 26.04 measured ×0.5 44%
adapter content pct 0 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0