SRR12976479

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq from whitefly Bemisia tabaci using HiSeq 2500, producing 10 million reads with exceptional quality (98.2% Q30). This microRNA-focused dataset enables quantification of small regulatory RNAs controlling plant-pest interactions and reproduction.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 537342000 reported

total reads 10746840 reported

n content pct 0.003 measured

pct q20 bases 99 measured

pct q30 bases 98.2 measured

gc content pct 54.1 measured

mean read length 50 measured

mean base quality 38.7 measured

adapter content pct 96.61 measured

duplication rate pct 83.49 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.2 measured ×1 100%

mean base quality 38.7 measured ×0.6 100%

adapter content pct 96.61 measured ×0.4 0%

duplication rate pct 83.49 measured ×0.4 0%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0