Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1299144

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 whole-exome sequencing (WXS) of Homo sapiens comprises 34.9 million short reads totaling 7 billion bases at high quality (93.7% ≥Q20, 84.9% ≥Q30). The excellent base quality and 46.4% GC composition enable reliable variant calling in coding regions for human genetic studies, disease association, or clinical genomics applications. As WXS data, it provides focused coverage of exonic regions suitable for identifying disease-causing variants or population allele frequencies.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7048553862 reported
total reads 34893831 reported
n content pct 0.006 measured
pct q20 bases 93.7 measured
pct q30 bases 84.9 measured
gc content pct 46.4 measured
mean read length 101 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 1.3 measured
mean target coverage 113.7 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 113.7 extrapolated ×1.2 100%
pct q30 bases 84.9 measured ×1 75%
duplication rate pct 1.3 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0