Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRR1304530

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

PacBio RS II long-read whole-genome sequencing of human DNA generates 163k reads averaging ~9 kb per read, enabling structural variant detection and repetitive-region assembly. Extremely shallow coverage (0.5×) and zero quality metrics at Q20+ limit this dataset to low-depth reference-free assembly and long-read method development. Useful primarily for benchmarking long-read aligners or testing haplotype reconstruction algorithms rather than variant discovery.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1498518890 reported
total reads 163482 reported
mean coverage 0.5 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 39.7 measured
mean read length 4028.9 measured
mean base quality 7.6 measured
adapter content pct 0 measured
duplication rate pct 0.08 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.5 extrapolated ×1.2 0%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0.08 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 48 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0