SRR13053829

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

ncRNA-seq (Bombyx mori), Grade D. Adapter content at 97.54% and duplication at 71.34% are the grade drivers. The 97.54% adapter indicates library collapse to predominantly adapter dimers, eliminating genuine ncRNA inserts and rendering sequence mapping impossible for expression quantification.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 143994063 reported

total reads 2823413 reported

n content pct 0.001 measured

pct q20 bases 99.4 measured

pct q30 bases 97.1 measured

gc content pct 48.8 measured

mean read length 51 measured

mean base quality 36.7 measured

adapter content pct 97.54 measured

duplication rate pct 71.34 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.1 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 97.54 measured ×0.4 0%

duplication rate pct 71.34 measured ×0.4 8%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0