SRR13070603

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila sp. st01m

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 10.66 measured

checksum ok yes reported

total bases 8063352877 reported

total reads 2710060 reported

n content pct 0 measured

pct q20 bases 61 measured

pct q30 bases 27.4 measured

pct reads q30 0 measured

sampled bases 50449045 measured

sampled reads 16950 measured

gc content pct 41.7 measured

polyg tail pct 0 measured

read length sd 4576.6 measured

read length max 59029 measured

read length min 1 measured

read length n50 7821 measured

max base quality 90 measured

mean read length 2976.3 measured

max n pct per pos 0 measured

mean base quality 21.9 measured

pct reads lt 100bp 0.05 measured

read length median 1032 measured

adapter content pct 0 measured

median read quality 22 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 7821 measured ×1 28%

mean base quality 21.9 measured ×0.8 100%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0