SRR13070607

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Zaprionus lachaisei

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.4 measured

checksum ok yes reported

total bases 12405817793 reported

total reads 3804313 reported

n content pct 0 measured

pct q20 bases 57.9 measured

pct q30 bases 24.6 measured

pct reads q30 0 measured

sampled bases 50998699 measured

sampled reads 14878 measured

gc content pct 40.8 measured

polyg tail pct 0 measured

read length sd 4949.4 measured

quality dropoff 8.2 measured

read length max 70309 measured

read length min 87 measured

read length n50 6307 measured

max base quality 90 measured

mean read length 3427.8 measured

max n pct per pos 0 measured

mean base quality 21.1 measured

pct reads lt 100bp 0.01 measured

read length median 1868.5 measured

adapter content pct 0 measured

median read quality 21.4 measured

duplication rate pct 0.08 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 6307 measured ×1 20%

mean base quality 21.1 measured ×0.8 100%

duplication rate pct 0.08 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0