SRR13070608

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Leucophenga varia

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 10.75 measured

checksum ok yes reported

total bases 8264429990 reported

total reads 5217620 reported

n content pct 0 measured

pct q20 bases 61.8 measured

pct q30 bases 28.6 measured

pct reads q30 0 measured

sampled bases 50593914 measured

sampled reads 32377 measured

gc content pct 36 measured

polyg tail pct 0 measured

read length sd 3342.6 measured

quality dropoff 9.4 measured

read length max 70374 measured

read length min 69 measured

read length n50 2954 measured

max base quality 90 measured

mean read length 1562.6 measured

max n pct per pos 0 measured

mean base quality 22.2 measured

pct reads lt 100bp 0.01 measured

read length median 734 measured

adapter content pct 0 measured

median read quality 21.7 measured

duplication rate pct 0.04 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 28.6 measured ×1 0%

duplication rate pct 0.04 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0