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SRR13070610
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
58/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Zaprionus indianus
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.94
measured
checksum ok
yes
reported
total bases
4219144329
reported
total reads
1709977
reported
n content pct
0
measured
pct q20 bases
29.8
measured
pct q30 bases
11.2
measured
pct reads q30
0
measured
sampled bases
50771112
measured
sampled reads
15158
measured
gc content pct
43.8
measured
polyg tail pct
0.02
measured
read length sd
3674.3
measured
read length max
68007
measured
read length min
5
measured
read length n50
6764
measured
max base quality
43
measured
mean read length
3349.5
measured
max n pct per pos
0
measured
mean base quality
15.7
measured
pct reads lt 100bp
1.83
measured
read length median
1718
measured
adapter content pct
0.01
measured
median read quality
14.7
measured
duplication rate pct
1.51
measured
overrepresented top pct
0.84
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 58/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
6764
measured
×1
22%
mean base quality
15.7
measured
×0.8
57%
duplication rate pct
1.51
measured
×0.5
100%
adapter content pct
0.01
measured
×0.4
100%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0