SRR13070614

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 4.86 measured

checksum ok yes reported

total bases 5123146241 reported

total reads 372834 reported

mean coverage 36.6 extrapolated

n content pct 0 measured

pct q20 bases 28.1 measured

pct q30 bases 12.4 measured

pct reads q30 0 measured

sampled bases 50047499 measured

sampled reads 3627 measured

gc content pct 40.7 measured

polyg tail pct 0.03 measured

read length sd 15493.2 measured

quality dropoff 7.7 measured

read length max 203293 measured

read length min 219 measured

read length n50 23362 measured

max base quality 80 measured

mean read length 13798.6 measured

max n pct per pos 0 measured

mean base quality 15 measured

pct reads lt 100bp 0 measured

read length median 8749 measured

adapter content pct 0 measured

median read quality 15 measured

duplication rate pct 0 measured

overrepresented top pct 0.03 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 36.6 extrapolated ×1.2 100%

read length n50 23362 measured ×1 100%

mean base quality 15 measured ×0.8 50%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0