SRR13070623

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila takahashii

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.72 measured

checksum ok yes reported

total bases 11346814378 reported

total reads 1280590 reported

n content pct 0 measured

pct q20 bases 64.3 measured

pct q30 bases 29.1 measured

pct reads q30 0 measured

sampled bases 51199763 measured

sampled reads 5619 measured

gc content pct 39.8 measured

polyg tail pct 0 measured

read length sd 14253.4 measured

quality dropoff 9.4 measured

read length max 267223 measured

read length min 179 measured

read length n50 17401 measured

max base quality 90 measured

mean read length 9111.9 measured

max n pct per pos 0 measured

mean base quality 22.7 measured

pct reads lt 100bp 0 measured

read length median 4672 measured

adapter content pct 0 measured

median read quality 23.3 measured

duplication rate pct 0 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 17401 measured ×1 85%

mean base quality 22.7 measured ×0.8 100%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0