SRR13070625

SRA

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 4.21 measured

checksum ok yes reported

total bases 7133020037 reported

total reads 640215 reported

mean coverage 51 extrapolated

n content pct 0 measured

pct q20 bases 59 measured

pct q30 bases 26.6 measured

pct reads q30 0 measured

sampled bases 51642425 measured

sampled reads 2391 measured

gc content pct 41.6 measured

polyg tail pct 0 measured

read length sd 25836.6 measured

quality dropoff 9.8 measured

read length max 274385 measured

read length min 219 measured

read length n50 32825 measured

max base quality 90 measured

mean read length 21598.7 measured

max n pct per pos 0 measured

mean base quality 21.6 measured

pct reads lt 100bp 0 measured

read length median 13270 measured

adapter content pct 0.04 measured

median read quality 22.1 measured

duplication rate pct 0 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 5 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 51 extrapolated ×1.2 100%

read length n50 32825 measured ×1 100%

mean base quality 21.6 measured ×0.8 100%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.04 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0