SRR13070639

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Zaprionus nigranus

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 9.05 measured

checksum ok yes reported

total bases 8088048883 reported

total reads 3359477 reported

n content pct 0 measured

pct q20 bases 47 measured

pct q30 bases 28.3 measured

pct reads q30 6 measured

sampled bases 47501424 measured

sampled reads 30404 measured

gc content pct 43.1 measured

polyg tail pct 0.01 measured

read length sd 2041.1 measured

read length max 78943 measured

read length min 5 measured

read length n50 2629 measured

max base quality 61 measured

mean read length 1562.3 measured

max n pct per pos 0 measured

mean base quality 21.7 measured

pct reads lt 100bp 1.16 measured

read length median 850 measured

adapter content pct 0 measured

median read quality 23.5 measured

duplication rate pct 1.47 measured

overrepresented top pct 0.77 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 28.3 measured ×1 0%

duplication rate pct 1.47 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0