SRR13070641

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila sturtevanti

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 4.57 measured

checksum ok yes reported

total bases 4959271146 reported

total reads 844972 reported

n content pct 0 measured

pct q20 bases 49.2 measured

pct q30 bases 17.5 measured

pct reads q30 0 measured

sampled bases 50879948 measured

sampled reads 8562 measured

gc content pct 34.5 measured

polyg tail pct 0 measured

read length sd 5677.5 measured

quality dropoff 8.7 measured

read length max 51473 measured

read length min 161 measured

read length n50 9438 measured

max base quality 90 measured

mean read length 5942.5 measured

max n pct per pos 0 measured

mean base quality 19 measured

pct reads lt 100bp 0 measured

read length median 4233 measured

adapter content pct 0 measured

median read quality 19.1 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 9438 measured ×1 38%

mean base quality 19 measured ×0.8 90%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0