SRR13070646

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila quadrilineata

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 7.95 measured

checksum ok yes reported

total bases 8281133905 reported

total reads 718966 reported

n content pct 0 measured

pct q20 bases 55.2 measured

pct q30 bases 19.9 measured

pct reads q30 0 measured

sampled bases 51361762 measured

sampled reads 8195 measured

gc content pct 39.4 measured

polyg tail pct 0 measured

read length sd 6320.4 measured

quality dropoff 9 measured

read length max 81487 measured

read length min 192 measured

read length n50 9201 measured

max base quality 90 measured

mean read length 6267.5 measured

max n pct per pos 0 measured

mean base quality 20.3 measured

pct reads lt 100bp 0 measured

read length median 4473 measured

adapter content pct 0 measured

median read quality 20.7 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 9201 measured ×1 37%

mean base quality 20.3 measured ×0.8 100%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0