SRR13070659

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

46/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila saltans

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 5.13 measured

checksum ok yes reported

total bases 11301059776 reported

total reads 2999573 reported

n content pct 0 measured

pct q20 bases 23.3 measured

pct q30 bases 5.6 measured

pct reads q30 0 measured

sampled bases 52996531 measured

sampled reads 17983 measured

gc content pct 36.9 measured

polyg tail pct 0 measured

read length sd 5869.1 measured

read length max 171326 measured

read length min 1 measured

read length n50 5195 measured

max base quality 90 measured

mean read length 2947 measured

max n pct per pos 0 measured

mean base quality 12.7 measured

pct reads lt 100bp 0.08 measured

read length median 1575 measured

adapter content pct 0 measured

median read quality 12.6 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 46/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 5195 measured ×1 13%

mean base quality 12.7 measured ×0.8 27%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0