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SRR13070660
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Drosophila prosaltans
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
5.29
measured
checksum ok
yes
reported
total bases
10743241265
reported
total reads
3695491
reported
n content pct
0
measured
pct q20 bases
55.9
measured
pct q30 bases
24.1
measured
pct reads q30
0
measured
sampled bases
50667848
measured
sampled reads
18282
measured
gc content pct
36.3
measured
polyg tail pct
0
measured
read length sd
5820.4
measured
quality dropoff
7.6
measured
read length max
192152
measured
read length min
72
measured
read length n50
5018
measured
max base quality
90
measured
mean read length
2771.5
measured
max n pct per pos
0
measured
mean base quality
20.7
measured
pct reads lt 100bp
0.03
measured
read length median
1425
measured
adapter content pct
0
measured
median read quality
20.4
measured
duplication rate pct
0
measured
overrepresented top pct
0.01
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
read length n50
5018
measured
×1
12%
mean base quality
20.7
measured
×0.8
100%
duplication rate pct
0
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
35 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0