SRR13070663

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Zaprionus indianus

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 7.48 measured

checksum ok yes reported

total bases 5869583165 reported

total reads 1508280 reported

n content pct 0 measured

pct q20 bases 48.7 measured

pct q30 bases 16.9 measured

pct reads q30 0 measured

sampled bases 51337309 measured

sampled reads 12959 measured

gc content pct 43.4 measured

polyg tail pct 0 measured

read length sd 4906.7 measured

quality dropoff 7.5 measured

read length max 53323 measured

read length min 89 measured

read length n50 7843 measured

max base quality 90 measured

mean read length 3961.5 measured

max n pct per pos 0 measured

mean base quality 18.8 measured

pct reads lt 100bp 0.01 measured

read length median 2099 measured

adapter content pct 0 measured

median read quality 18.9 measured

duplication rate pct 0 measured

overrepresented top pct 0.01 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 7843 measured ×1 28%

mean base quality 18.8 measured ×0.8 88%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0