SRR13070667

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila ambigua

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.36 measured

checksum ok yes reported

total bases 13188146418 reported

total reads 43669359 reported

n content pct 0 measured

pct q20 bases 98.2 measured

pct q30 bases 95.6 measured

pct reads q30 98.8 measured

sampled bases 107123326 measured

sampled reads 709426 measured

gc content pct 46.3 measured

polyg tail pct 0.01 measured

read length sd 0 measured

quality dropoff -0.2 measured

read length max 151 measured

read length min 151 measured

read length n50 151 measured

max base quality 41 measured

mean read length 151 measured

max n pct per pos 0.098 measured

mean base quality 39.4 measured

pct reads lt 100bp 0 measured

read length median 151 measured

adapter content pct 29.86 measured

median read quality 40.5 measured

duplication rate pct 13.37 measured

overrepresented top pct 0.04 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

duplication rate pct 13.37 measured ×0.5 83%

adapter content pct 29.86 measured ×0.4 0%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0