SRR13105661

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq of Bombyx mori (silkworm) on HiSeq 2000; 15.5M reads at exceptional quality (Q30 96.7%, 46.8% GC) enable robust quantification of small RNA populations. Specialized for microRNA discovery, expression profiling, and identification of small regulatory molecules across insect developmental stages or tissues.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 760924969 reported

total reads 15529081 reported

n content pct 0.008 measured

pct q20 bases 99 measured

pct q30 bases 96.7 measured

gc content pct 46.8 measured

mean read length 49 measured

mean base quality 37.9 measured

adapter content pct 0 measured

duplication rate pct 81.6 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%

mean base quality 37.9 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 81.6 measured ×0.4 0%

QC cost 1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0