Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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SRR13132427

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Dhillonvirus on NextSeq 500 (136 bp). Grade C (72/100) with measured duplication at 69.11% (scores 0/100), which is the critical bottleneck; Q30 is adequate at 89.2% but duplication dominates. All metrics measured; the extreme duplication rate suggests significant PCR bias or contamination, severely limiting utility for variant calling or SNP discovery.

Data type / assay
WGS
Organism
Dhillonvirus
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2159200786 reported
total reads 7968142 reported
n content pct 0.017 measured
pct q20 bases 93.7 measured
pct q30 bases 89.2 measured
gc content pct 44.5 measured
mean read length 136.3 measured
mean base quality 33.5 measured
adapter content pct 0 measured
duplication rate pct 69.11 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%
duplication rate pct 69.11 measured ×0.5 0%
adapter content pct 0 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0