Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR13153561

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina NovaSeq 6000 bulk RNA-seq from Riptortus pedestris generates 29.1 million short reads totaling 8.7 billion bases at high quality (98.4% ≥Q20, 95% ≥Q30). The minimal N content and 41.7% GC composition support robust transcript quantification and gene expression profiling. The substantial read depth enables sensitive detection of differentially expressed genes and supports comparative transcriptomics studies in this hemipteran species.

Data type / assay
bulk-RNA-seq
Organism
Riptortus pedestris
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8740924500 reported
total reads 29136415 reported
n content pct 0 measured
pct q20 bases 98.4 measured
pct q30 bases 95 measured
gc content pct 41.7 measured
mean read length 150 measured
mean base quality 36.2 measured
adapter content pct 0.01 measured
duplication rate pct 32.59 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 32.59 measured ×0.4 94%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0