Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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SRR13224035

ENA first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Synthetic metagenome whole-genome sequencing on NovaSeq 6000 produces 39.1M short reads at good quality (Q30 92.4%, 46.6% GC). Known composition makes this dataset valuable for benchmarking metagenomic assembly, binning, and taxonomic profiling pipelines without confounding biological variability. Primary limitation: synthetic nature does not capture real environmental community complexity or strain heterogeneity.

Data type / assay
WGS
Organism
synthetic metagenome
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 11820409860 reported
total reads 39140430 reported
n content pct 0 measured
pct q20 bases 96.9 measured
pct q30 bases 92.4 measured
gc content pct 46.6 measured
mean read length 151 measured
mean base quality 35.7 measured
adapter content pct 43.93 measured
duplication rate pct 9.42 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%
duplication rate pct 9.42 measured ×0.5 96%
adapter content pct 43.93 measured ×0.4 0%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0