Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR13240972

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq from whitefly (Bemisia tabaci) on HiSeq 2500 (150 bp). Grade B (86/100) with high base quality (Q30 92.4%, mean 38.9) but measured adapter content at 16.59% scores only 19/100, indicating incomplete adapter trimming. All metrics measured; reuse requires careful pre-processing or trimming; the high adapters are the primary reuse concern.

Data type / assay
bulk-RNA-seq
Organism
Bemisia tabaci
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 12875992500 reported
total reads 42919975 reported
n content pct 0.012 measured
pct q20 bases 96.7 measured
pct q30 bases 92.4 measured
gc content pct 39.9 measured
mean read length 150 measured
mean base quality 38.9 measured
adapter content pct 16.59 measured
duplication rate pct 21.68 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%
mean base quality 38.9 measured ×0.6 100%
adapter content pct 16.59 measured ×0.4 19%
duplication rate pct 21.68 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0