Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR13246532

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 bulk RNA-seq profiles Timema monikensis from 49 million short reads totaling 9.9 billion bases with exceptional quality (97.2% ≥Q20, 94.5% ≥Q30). The minimal N content, 41.4% GC composition, and very high read depth enable sensitive gene expression quantification and detection of tissue-specific or developmentally regulated transcripts. The dataset's large size supports robust statistical power for comparative transcriptomics across experimental conditions or life stages.

Data type / assay
bulk-RNA-seq
Organism
Timema monikensis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9906698726 reported
total reads 49043063 reported
n content pct 0.006 measured
pct q20 bases 97.2 measured
pct q30 bases 94.5 measured
gc content pct 41.4 measured
mean read length 101 measured
mean base quality 35.6 measured
adapter content pct 0.39 measured
duplication rate pct 35.42 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%
mean base quality 35.6 measured ×0.6 100%
adapter content pct 0.39 measured ×0.4 100%
duplication rate pct 35.42 measured ×0.4 88%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0