Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
← Dataset search

SRR1324888

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 bulk RNA-seq of Culex pipiens with 13.3 million short reads at high quality (Q30=90.5%) and elevated GC content (49.5%). The dataset provides independent transcriptome depth for this disease vector, enabling targeted expression analysis and ortholog identification for comparative genomics studies.

Data type / assay
bulk-RNA-seq
Organism
Culex pipiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 680140947 reported
total reads 13336097 reported
n content pct 0.018 measured
pct q20 bases 96.4 measured
pct q30 bases 90.5 measured
gc content pct 49.5 measured
mean read length 51 measured
mean base quality 35.6 measured
adapter content pct 0.1 measured
duplication rate pct 25.73 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.5 measured ×1 100%
mean base quality 35.6 measured ×0.6 100%
adapter content pct 0.1 measured ×0.4 100%
duplication rate pct 25.73 measured ×0.4 100%
QC cost 1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0