SRR1328015

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 ncRNA (small/non-coding RNA) sequencing of Bombyx mori (silkworm) with 4.8 million reads reaching excellent quality (Q30=99.1%, Q20=99.6%). This dataset is specialized for discovering and quantifying regulatory RNAs in lepidopteran development and metabolism, with minimal sequencing noise.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 248107808 reported

total reads 4771304 reported

n content pct 0.011 measured

pct q20 bases 99.6 measured

pct q30 bases 99.1 measured

gc content pct 45.6 measured

mean read length 52 measured

mean base quality 39.4 measured

adapter content pct 96.76 measured

duplication rate pct 67.12 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.1 measured ×1 100%

mean base quality 39.4 measured ×0.6 100%

adapter content pct 96.76 measured ×0.4 0%

duplication rate pct 67.12 measured ×0.4 18%

QC cost 57 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0