Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR1328016

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 ncRNA-Seq of the silkworm *Bombyx mori* achieves 99.2% Q20 and 98.3% Q30 across 5.5M reads, enabling high-fidelity mapping of non-coding RNAs governing development, metamorphosis, and silk production in this economically important Lepidopteran. Search: *Bombyx mori* ncRNA, silkworm genomics, non-coding RNA.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 287214668 reported
total reads 5523359 reported
n content pct 0.011 measured
pct q20 bases 99.2 measured
pct q30 bases 98.3 measured
gc content pct 48 measured
mean read length 52 measured
mean base quality 39.1 measured
adapter content pct 96.77 measured
duplication rate pct 60.55 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.3 measured ×1 100%
mean base quality 39.1 measured ×0.6 100%
adapter content pct 96.77 measured ×0.4 0%
duplication rate pct 60.55 measured ×0.4 32%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0