SRR1328017

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 2000 ncRNA-Seq of Bombyx mori generated 24.5M reads with moderate quality (80.3% Q30) and elevated N-content (0.043%), suggesting early sequencing chemistry effects. Despite quality issues, this silkworm small-RNA dataset enables investigation of regulatory RNAs involved in silk production.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 883406160 reported

total reads 24539060 reported

n content pct 0.043 measured

pct q20 bases 91.8 measured

pct q30 bases 80.3 measured

gc content pct 43.7 measured

mean read length 36 measured

mean base quality 33 measured

adapter content pct 0 measured

duplication rate pct 62.76 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.3 measured ×1 52%

mean base quality 33 measured ×0.6 83%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 62.76 measured ×0.4 27%

QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0