Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR13311925

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 bulk RNA-seq from Pieris napi (butterfly) with 22.4 million short reads and high quality metrics (Q30=96%, Q20=98.8%). This transcriptome can address developmental, ecological, or population-level gene expression questions in a lepidopteran model, with clean sequencing chemistry evident in the low N-content.

Data type / assay
bulk-RNA-seq
Organism
Pieris napi
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5324488556 reported
total reads 22428794 reported
n content pct 0 measured
pct q20 bases 98.8 measured
pct q30 bases 96 measured
gc content pct 44.1 measured
mean read length 120.6 measured
mean base quality 36.1 measured
adapter content pct 0.03 measured
duplication rate pct 53.35 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 0.03 measured ×0.4 100%
duplication rate pct 53.35 measured ×0.4 48%
QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0