SRR1333838

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 316230772 reported

total reads 6081361 reported

n content pct 0.011 measured

pct q20 bases 99.3 measured

pct q30 bases 98.6 measured

gc content pct 46.9 measured

mean read length 52 measured

mean base quality 39.2 measured

adapter content pct 96.32 measured

duplication rate pct 65.61 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.6 measured ×1 100%

mean base quality 39.2 measured ×0.6 100%

adapter content pct 96.32 measured ×0.4 0%

duplication rate pct 65.61 measured ×0.4 21%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0