SRR13500760

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Panthera tigris tigris

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 57644606100 reported

total reads 192148687 reported

n content pct 0.014 measured

pct q20 bases 91.6 measured

pct q30 bases 84.7 measured

gc content pct 44.7 measured

mean read length 150 measured

mean base quality 36.4 measured

adapter content pct 43.05 measured

duplication rate pct 14.68 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.7 measured ×1 74%

duplication rate pct 14.68 measured ×0.5 79%

adapter content pct 43.05 measured ×0.4 0%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0