SRR14234623

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

BGISEQ-500 miRNA-Seq of Bombyx mori (silkworm) generated 23.6M reads with high quality (95.6% Q30, 55.6% GC) and slightly elevated N-content (0.017%). This lepidopteran microRNA dataset enables investigation of regulatory networks controlling silk production, metamorphosis, and immune responses in domesticated insects.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1178591700 reported

total reads 23571834 reported

n content pct 0.017 measured

pct q20 bases 98.5 measured

pct q30 bases 95.6 measured

gc content pct 55.6 measured

mean read length 50 measured

mean base quality 36 measured

adapter content pct 0 measured

duplication rate pct 74.69 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 36 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 74.69 measured ×0.4 1%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0