SRR14234635

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

BGISEQ-500 platform miRNA-seq of Bombyx mori (silkworm) with 24.6 million short reads at high quality (Q30=96.1%) and notably elevated GC content (57.3%). This small-RNA dataset uniquely characterizes regulatory miRNAs in lepidopteran metabolism and development, offering an alternative to Illumina sequencing chemistry for miRNA discovery.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1232115700 reported

total reads 24642314 reported

n content pct 0.018 measured

pct q20 bases 98.7 measured

pct q30 bases 96.1 measured

gc content pct 57.3 measured

mean read length 50 measured

mean base quality 36.2 measured

adapter content pct 0 measured

duplication rate pct 77.58 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 77.58 measured ×0.4 0%

QC cost 58 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0