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SRR1449288
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
73/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Bos taurus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
10.33
measured
checksum ok
yes
reported
total bases
2951407314
reported
total reads
17142177
reported
n content pct
0.006
measured
pct q20 bases
94.2
measured
pct q30 bases
79
measured
pct reads q30
76.8
measured
sampled bases
63458100
measured
sampled reads
662351
measured
gc content pct
43.4
measured
polyg tail pct
0
measured
read length sd
10.5
measured
quality dropoff
1.8
measured
read length max
101
measured
read length min
51
measured
read length n50
101
measured
max base quality
41
measured
mean read length
95.8
measured
max n pct per pos
0.16
measured
mean base quality
33
measured
pct reads lt 100bp
33.61
measured
read length median
101
measured
adapter content pct
0
measured
median read quality
33
measured
duplication rate pct
16.81
measured
overrepresented top pct
0.05
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 73/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
79
measured
×1
45%
mean base quality
33
measured
×0.6
83%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
16.81
measured
×0.4
100%
QC cost
51 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0