SRR14724507

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina HiSeq 4000 whole-exome sequencing (WXS) of Homo sapiens with 42.2 million short reads at excellent quality (Q30=97.3%) across 12.7 billion bases. This exome dataset is optimized for clinical-grade variant discovery, prioritizing coding and regulatory regions relevant to human genetic disease and population studies.

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12673476600 reported

total reads 42244922 reported

n content pct 0.004 measured

pct q20 bases 99 measured

pct q30 bases 97.3 measured

gc content pct 51.5 measured

mean read length 150 measured

mean base quality 39.9 measured

adapter content pct 24.8 measured

duplication rate pct 23.89 measured

mean target coverage 204.4 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 204.4 extrapolated ×1.2 100%

pct q30 bases 97.3 measured ×1 100%

duplication rate pct 23.89 measured ×0.5 64%

adapter content pct 24.8 measured ×0.4 0%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0