SRR1472854

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

454 GS FLX pyrosequencing of Camellia oleifera RNA yielding 172,391 longer reads totaling 51 million bases with lower base quality (Q30=71.6%). This data reflects mid-throughput long-read technology and is suitable for transcriptome assembly and gene annotation in this oil-bearing plant, though users should apply quality-aware assembly strategies.

Data type / assay

bulk-RNA-seq

Organism

Camellia oleifera

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 51174141 reported

total reads 172391 reported

n content pct 0.089 measured

pct q20 bases 88.4 measured

pct q30 bases 71.6 measured

gc content pct 42.6 measured

mean read length 296.8 measured

mean base quality 32.9 measured

adapter content pct 0 measured

duplication rate pct 16.38 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.6 measured ×1 8%

mean base quality 32.9 measured ×0.6 82%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 16.38 measured ×0.4 100%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0