SRR1505904

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

34/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina MiSeq WGS of the nosocomial pathogen *Klebsiella pneumoniae* KPNIH1 yields 951k reads with 77% Q20 and 68.3% Q30—significant quality challenges inherent to MiSeq platform and small genome sequencing requiring depth-compensated assembly. Search: *Klebsiella pneumoniae* WGS, pathogen genomics, antibiotic resistance.

Data type / assay

WGS

Organism

Klebsiella pneumoniae subsp. pneumoniae KPNIH1

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 285582000 reported

total reads 951940 reported

n content pct 0.019 measured

pct q20 bases 77 measured

pct q30 bases 68.3 measured

gc content pct 56.4 measured

mean read length 150 measured

mean base quality 28 measured

adapter content pct 9.57 measured

duplication rate pct 8.34 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 34/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 68.3 measured ×1 0%

duplication rate pct 8.34 measured ×0.5 99%

adapter content pct 9.57 measured ×0.4 39%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0