SRR1519110

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 RNA-seq of *Polistes canadensis* produces 16.6M reads, 3.31 Gb bases, and 98.5% Q20, providing large-scale wasp transcriptome coverage complementary to SRR1519112 for multi-sample comparative analysis of social insect gene expression. Search: *Polistes canadensis* transcriptome, social wasp genomics.

Data type / assay

bulk-RNA-seq

Organism

Polistes canadensis

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3310759800 reported

total reads 16553799 reported

n content pct 0.001 measured

pct q20 bases 98.5 measured

pct q30 bases 93.3 measured

gc content pct 40 measured

mean read length 100 measured

mean base quality 35.8 measured

adapter content pct 0.01 measured

duplication rate pct 19.7 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.3 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 19.7 measured ×0.4 100%

QC cost 49 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0