SRR1521753

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 RNA-seq of *Anopheles coluzzii* produces 18.8M reads and 2.03 Gb bases with 94.8% Q20, supporting transcriptome profiling of mosquito development, immunity, and malaria parasite responses. Search: *Anopheles coluzzii* RNA-seq, malaria vector transcriptomics.

Data type / assay

bulk-RNA-seq

Organism

Anopheles coluzzii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2029518612 reported

total reads 18791839 reported

n content pct 0.01 measured

pct q20 bases 94.8 measured

pct q30 bases 88 measured

gc content pct 51.5 measured

mean read length 108 measured

mean base quality 34.2 measured

adapter content pct 0.48 measured

duplication rate pct 57.76 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%

mean base quality 34.2 measured ×0.6 100%

adapter content pct 0.48 measured ×0.4 100%

duplication rate pct 57.76 measured ×0.4 38%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0