SRR1553526

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Zaire ebolavirus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 58877344 reported

total reads 291472 reported

n content pct 0 measured

pct q20 bases 83.5 measured

pct q30 bases 77.4 measured

gc content pct 54.2 measured

mean read length 101 measured

mean base quality 30.5 measured

adapter content pct 12 measured

duplication rate pct 42.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 77.4 measured ×1 37%

mean base quality 30.5 measured ×0.6 42%

adapter content pct 12 measured ×0.4 44%

duplication rate pct 42.86 measured ×0.4 71%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0