SRR1571718

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq with excellent base quality masked by extreme processing artifacts. Grade D reflects adapter content at 97.91% and duplication 80.24%, both scored 0/100—extreme but expected for small-RNA libraries where biological redundancy is high and adapters dominate short 51 bp reads. Reuse requires specialized miRNA-aware trimming and deduplication pipelines.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 477447057 reported

total reads 9361707 reported

n content pct 0.002 measured

pct q20 bases 98.7 measured

pct q30 bases 96.2 measured

gc content pct 50.2 measured

mean read length 51 measured

mean base quality 37.9 measured

adapter content pct 97.91 measured

duplication rate pct 80.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

mean base quality 37.9 measured ×0.6 100%

adapter content pct 97.91 measured ×0.4 0%

duplication rate pct 80.24 measured ×0.4 0%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0