Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR1571719

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read bulk RNA-seq from honeybee; QC grade C indicates moderate contamination and signal loss from duplication. Adapter content (14.28%) and high duplication (56.56%) jointly reduce effective sequencing depth; standard preprocessing can partially recover usability but transcript abundance estimates will require careful normalization.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2052412044 reported
total reads 7440637 reported
n content pct 0.195 measured
pct q20 bases 97.5 measured
pct q30 bases 94.9 measured
gc content pct 45.1 measured
mean read length 151 measured
mean base quality 35.9 measured
adapter content pct 14.28 measured
duplication rate pct 56.56 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 14.28 measured ×0.4 32%
duplication rate pct 56.56 measured ×0.4 41%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0