Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR1571721

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq with acceptable base quality undermined by high adapter content and duplication. Grade C reflects adapter content at 16.17% and duplication 57.22% as primary concerns, both well below target; base quality remains respectable (Q30=95.1%). Reuse requires preprocessing to remove adapters and careful deduplication strategy.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4040418067 reported
total reads 14657321 reported
n content pct 0.246 measured
pct q20 bases 97.6 measured
pct q30 bases 95.1 measured
gc content pct 44.9 measured
mean read length 151 measured
mean base quality 35.9 measured
adapter content pct 16.17 measured
duplication rate pct 57.22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 16.17 measured ×0.4 21%
duplication rate pct 57.22 measured ×0.4 40%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0