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SRR1582930
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
54/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
3.12
measured
checksum ok
yes
reported
total bases
812971430
reported
total reads
1619465
reported
n content pct
0
measured
pct q20 bases
89.7
measured
pct q30 bases
86.2
measured
pct reads q30
85.2
measured
sampled bases
119140162
measured
sampled reads
474662
measured
gc content pct
44.1
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-5.5
measured
read length max
251
measured
read length min
251
measured
read length n50
251
measured
max base quality
40
measured
mean read length
251
measured
max n pct per pos
0
measured
mean base quality
34.8
measured
pct reads lt 100bp
0
measured
read length median
251
measured
adapter content pct
47.91
measured
median read quality
36.4
measured
duplication rate pct
90.92
measured
mean target coverage
13.1
extrapolated
overrepresented top pct
0.59
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 54/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.2
measured
×1
81%
adapter content pct
47.91
measured
×0.5
0%
QC cost
48 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0