SRR1582944

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 3.39 measured

checksum ok yes reported

total bases 266236265 reported

total reads 545129 reported

n content pct 0.002 measured

pct q20 bases 96.1 measured

pct q30 bases 94.1 measured

pct reads q30 98.2 measured

sampled bases 132104014 measured

sampled reads 541058 measured

gc content pct 44.3 measured

polyg tail pct 0.01 measured

read length sd 22 measured

quality dropoff 3.6 measured

read length max 251 measured

read length min 100 measured

read length n50 251 measured

max base quality 40 measured

mean read length 244.2 measured

max n pct per pos 0.1 measured

mean base quality 36.5 measured

pct reads lt 100bp 0 measured

read length median 251 measured

adapter content pct 0 measured

median read quality 37.2 measured

duplication rate pct 89.63 measured

mean target coverage 4.3 extrapolated

overrepresented top pct 0.57 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0