Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR1583604

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 bulk RNA-Seq of Aedes aegypti yielded 42M reads (9 Gb) with high quality (94.2% Q30, 46.4% GC). This large-scale yellow fever mosquito transcriptome provides comprehensive gene expression profiling for vector-competence studies, insecticide metabolism, and immune response to viral infection.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8983370468 reported
total reads 42374389 reported
n content pct 0.013 measured
pct q20 bases 98.7 measured
pct q30 bases 94.2 measured
gc content pct 46.4 measured
mean read length 106 measured
mean base quality 36.2 measured
adapter content pct 3.71 measured
duplication rate pct 48.39 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 3.71 measured ×0.4 91%
duplication rate pct 48.39 measured ×0.4 59%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0